| 13-06-2022 |
Hardware libre para la deposición gotas microfluídicas
La clasificación de gotitas microfluídicas permite el manejo experimental de millones de experimentos de biología molecular en un día. Para seguir cultivando las células en gotitas, es necesario recogerlas e individualizarlas, lo que puede hacerse en una placa de pocillos o en una placa de cultivo. En este proyecto, el objetivo es desarrollar un sistema de deposición de gotas de este tipo utilizando métodos de creación de prototipos, ejemplos de la literatura y libre hardware.
Keywords:
Prototipado
libre hardware
Prerequisitos:
no tiene.
Tiene un método de evaluación Nota 1-7, con 10 créditos y tiene 1/2 vacantes disponibles |
Mentor(es): Ver en la plataforma |
| 15-12-2021 |
Desarrollo de software para formatos de documentación de Open Source Hardware
Se trata de un puesto remunerado para un proyecto de desarrollo de software abierto para seguir desarrollando el editor de documentación DocuBricks (https://docubricks.com/software.jsp) y su formato estándar, especializado en instrumentación de Hardware Abierto en laboratorios científicos. El desarrollo incluye el desarrollo de un editor JS para trabajar en el marco Eletron; para crear una herramienta de conversión entre GitBuilding (https://gitbuilding.io/) y DocuBricks; así como un desarrollo de recursos GitHub. https://forum.openhardware.science/t/software-for-making-assembly-manuals/2970/20?u=tobey
Prerequisitos:
no tiene.
Tiene un método de evaluación Nota 1-7, con 10 créditos y tiene 1/2 vacantes disponibles |
Mentor(es): Ver en la plataforma |
| 22-06-2023 |
GitBuilding open software development documentation
This is a paid position for an open software development project to further develop the GitBuilding documentation editor, specialising in Open Hardware instrumentation in scientific laboratories. The development includes further development of an editor in Electron to work in the Eletron framework; to create a conversion tool between GitBuilding (https://gitbuilding.io/) and DocuBricks; as well as a GitHub resource development.
Keywords:
Prerequisites:
None.
Evaluation method: Nota 1-7, with 0/2 available vacants |
Mentor(s): Open in the plataform |
| 19-12-2022 |
microfluidic image analysis for single cell or single molecule analysis
Microfluidic singe cell (mother machine) or single molecule analysis (synthetic biology essays in cell-free reaction droplets) are powerful platforms allowing acurate biomedical quantification of pathogenic load and bacteria phenotypes. However, these methods are only available in few leading labs in the worlds. In this project, we will explore the use of the open flexure microscope and potentially 3d printed syringe pumps to open up the workflow for many more users. This requires biological lab work at the IIBM including some software testing and or improvent.
Keywords:
Microfluidos
Prerequisites:
None.
Evaluation method: Nota 1-7, with 0/2 available vacants |
Mentor(s): Open in the plataform |
| 11-12-2022 |
Optimisation of an automated stage to deposit microfluidic droplets for bio applications
Microfluidic droplet sorting allows the experimental handling of millions of molecular biology experiments in one day. To further culture cells in droplets, they need to be collected and individualised, which can be done in a well plate or culture plate. In this project, the aim is to optimise such a droplet deposition system using prototyping methods, examples from the literature and software development in python.
Prerequisites:
None.
Evaluation method: Nota 1-7, with 0/1 available vacants |
Mentor(s): Open in the plataform |
| 13-06-2022 |
Open source hardware to deposit microfluidic droplets
Microfluidic droplet sorting allows the experimental handling of millions of molecular biology experiments in one day. To further culture cells in droplets, they need to be collected and individualised, which can be done in a well plate or in a culture plate. In this project, the aim is to develop such a droplet deposition system using prototyping methods, examples from the literature and free hardware.
Keywords:
Prototipado
libre hardware
Prerequisites:
None.
Evaluation method: Nota 1-7, with 1/2 available vacants |
Mentor(s): Open in the plataform |
| 13-06-2022 |
Microfluidic droplet experiments for single cell microbial genomics of pathogens
This projects in in the context of an ongoing research collaboration and focuses on experiments using cutting edge microfluidic technology for single cell genomics. This helps us answer important questions about bacterial resistance to antibiotics. Some prior molecular biology or microbiology knowledge (such as how to work with a pipette) is required for the participation in this project.
Prerequisites:
None.
Evaluation method: Nota 1-7, with 0/1 available vacants |
Mentor(s): Open in the plataform |
| 15-12-2021 |
Software development for Open Source Hardware documentation formats
This is a paid position for an open software development project to further develop the DocuBricks (https://docubricks.com/software.jsp) documentation editor and and standard format, specialised for Open Hardware instrumentation in science laboratories. The development includes developing a JS editor to work in the Eletron framework; to create a conversion tool between GitBuilding (https://gitbuilding.io/) and DocuBricks; as well as a GitHub resource development. https://forum.openhardware.science/t/software-for-making-assembly-manuals/2970/20?u=tobey
Prerequisites:
None.
Evaluation method: Nota 1-7, with 1/2 available vacants |
Mentor(s): Open in the plataform |
| 19-07-2021 |
Open Hardware for the plate-deposition of microfluidic droplets
The sorting of microfluidic droplets allows the experimental handling of millions of molecular biology experiments in a day. If cells in droplets are to be further cultivated, it is necessary to collect and individualise them, which can be done in a well-plate or on a rotating round culture plate. In this project, the aim is to develop such a droplet deposition system using prototyping methods, literature examples, and open source hardware.
Prerequisites:
None.
Evaluation method: Nota 1-7, with 0/1 available vacants |
Mentor(s): Open in the plataform |
| 19-07-2021 |
Development of an open hardware based wide field computational microscope for pollen recognition
Development of a working low-cost computational wide-field microscope for honey-pollen imaging (remotely at home) and analysis of generated data with MatLab or Python. A 3D printed prototype already exsists based on the publication 'Low-cost, sub-micron resolution, wide-field computational microscopy using opensource hardware’. Students should already have basic experience with prototyping and coding.
Keywords:
programación
automatización
microscopia
IMPRESION 3D
interdisciplinaria
libre hardware
polen
Prerequisites:
None.
Evaluation method: Nota 1-7, with 0/1 available vacants |
Mentor(s): Open in the plataform |
| 19-07-2021 |
Generation of multi-colour 3d printable models of bacterial pumps for antibiotic resistance
This is a remote research project to generate good 3d printable models from protein structures in biological databases of the cell-membrane pumps that cause antibiotic resistances in bacteria. In addition to improving the 3d printability of the protein complexes, the quaternary structure of the proteins should also be used to segment the model into up to 4 materials (different colours for 3d prints), which help to understand the function of the pumps. Basic experience in 3d printing and interest to find solutions to problems independently is a requirement.
Prerequisites:
None.
Evaluation method: Nota 1-7, with 0/1 available vacants |
Mentor(s): Open in the plataform |